Assembly Summary | |
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Date Published | June 3, 2024 |
Length | 4,597,180 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (0 Circularized) |
Assembly Level | Chromosome |
N50 | 4,594,747 nt |
%GC | 40.13% |
Organism Summary | |
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Name | ATCC® TSD-268™ |
Isolation | Leachate from Hafod Quarry Landfill. |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Annotations Summary | |
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Number of CDS | 4,275 |
Number of Hypothetical Proteins | 629 |
Number of tRNA | 55 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 42,195 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 9,955,664 |
Illumina Mean Coverage Depth | 309.956× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
While this genome does not pass our strict threshold for CheckM contamination, additional analysis indicates it is not contaminated. This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions