Organism Summary | |
---|---|
Catalog Number | ATCC® 43099™ |
Strain Alias | NCMB 2190 [MS3] |
Isolation | Lake Magadi |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | June 11, 2025 |
Length | 4,443,382 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (All Circularized) |
N50 | 3,751,600 nt |
%GC | 61.05% |
Annotations Summary | |
---|---|
Number of CDS | 4197 |
Number of Hypothetical Proteins | 1017 |
Number of tRNA | 49 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 266,656 |
Oxford Nanopore Median Q Score | 40 |
Illumina Read Count | 5,320,452 |
Illumina Mean Coverage Depth | 300.728× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 5,320,452 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 98.73% |
Estimated genome contamination | 0% |
Average depth of coverage | 300.728× |
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions