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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 700388™ |
| Isolation | Soil from rice field in Central Thailand |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 6,719,607 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (2 Circularized) |
| N50 | 3,560,435 nt |
| %GC | 67.63% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5838 |
| Number of Hypothetical Proteins | 662 |
| Number of tRNA | 60 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 10,554 |
| Oxford Nanopore Median Q Score | 15 |
| Illumina Read Count | 3,897,801 |
| Illumina Mean Coverage Depth | 117.092× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,897,801 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.06% |
| Average depth of coverage | 117.092× |
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