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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2021 |
| Length | 6,838,304 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 11 (3 Circularized) |
| N50 | 4,050,077 nt |
| %GC | 62.28% |
| Organism Summary | |
|---|---|
| Name | ATCC® 35423™ |
| Strain Name | USDA 205 [CCUG 27877, DSM 5851, HAMBI 2075, ICMP 11139, IFO 14780, LMG 6217, NRRL B-14241, NRRL B-14594, PRC 205] |
| Isolation | Soybean root nodule, Glycine max |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6400 |
| Number of Hypothetical Proteins | 724 |
| Number of tRNA | 55 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 190,414 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,765,919 |
| Illumina Mean Coverage Depth | 196.917× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,765,919
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.21%
PassedAverage depth of coverage196.917×
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