ATCC® 700505™ | Mycobacterium immunogenum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 700505™
Strain Alias	MC779 [BH29, CIP 106684]
Isolation	Equipment, nosocomial pseudo-outbreak involving water-borne contamination of automated bronchoscope washer
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	June 3, 2024
Length	5,567,327 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (1 Circularized)
N50	4,540,386 nt
%GC	64.28%

Annotations Summary
Number of CDS	5461
Number of Hypothetical Proteins	929
Number of tRNA	58
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	87,748
Oxford Nanopore Median Q Score	35
Illumina Read Count	12,986,548
Illumina Mean Coverage Depth	345.087×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	12,986,548
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.43%
Estimated genome contamination	1.77%
Illumina depth of coverage	345.087×
ONT depth of coverage	128.635×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions