Organism Summary | |
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Catalog Number | ATCC® 90507™ |
Strain Alias | JCM 7366 [CBS 114.92, IMI 351927, PA-2M] |
Isolation | Sludge of pig manure compost |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | December 15, 2021 |
Length | 55,212,266 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 110 (0 Circularized) |
N50 | 1,053,662 nt |
%GC | 46.33% |
Annotations Summary | |
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Number of BUSCO Annotations | 748 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 57,784 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 35,187,590 |
Illumina Mean Coverage Depth | 91.155× |
Illumina Median Q Score | 37 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 35,187,590 |
Median Q score, all bases | 37 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 98.68% |
Average depth of coverage | 91.155× |