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- Xanthomonas citri
- Xanthomonas citri subsp. citri
Xanthomonas citri subsp. citri (ATCC® 49118™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 5,255,009 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 5,141,828 nt |
| %GC | 64.75% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49118™ |
| Isolation | Lime (Citrus aurantifolia) |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,453 |
| Number of Hypothetical Proteins | 645 |
| Number of tRNA | 54 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 33,660 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 2,922,426 |
| Illumina Mean Coverage Depth | 103.978× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads2,922,426
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage103.978×
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