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Overview
Genome Browser
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 5,431,822 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 5,416,622 nt |
| %GC | 35.29% |
| Organism Summary | |
|---|---|
| Name | ATCC® 14579™ |
| Strain Name | [BCRC 10603, CCM 2010, CCUG 7414, CIP 66.24, DSM 31, HAMBI 1887, HAMBI 1905, IAM 12605, JCM 2152, LMG 6923, NBRC 15305, NCCB 75008, NCIMB 9373, NCTC 2599, NRRL B-3711, VKM B-504] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5445 |
| Number of Hypothetical Proteins | 566 |
| Number of tRNA | 106 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 13 |
| Number of 23s rRNA | 13 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 85,356 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 8,410,467 |
| Illumina Mean Coverage Depth | 205.006× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,410,467
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.34%
PassedEstimated genome contamination0.58%
PassedAverage depth of coverage205.006×
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