Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14579™ |
| Strain Alias | [BCRC 10603, CCM 2010, CCUG 7414, CIP 66.24, DSM 31, HAMBI 1887, HAMBI 1905, IAM 12605, JCM 2152, LMG 6923, NBRC 15305, NCCB 75008, NCIMB 9373, NCTC 2599, NRRL B-3711, VKM B-504] |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 5,431,822 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 5,416,622 nt |
| %GC | 35.29% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5445 |
| Number of Hypothetical Proteins | 566 |
| Number of tRNA | 106 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 13 |
| Number of 23s rRNA | 13 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 85,356 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 8,410,467 |
| Illumina Mean Coverage Depth | 205.006× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 8,410,467 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.34% |
| Estimated genome contamination | 0.58% |
| Average depth of coverage | 205.006× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline