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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 13124™ |
| Strain Alias | NCTC 8237 [ATCC 19408, CIP 103 409, CN 1491, NCIB 6125, NCTC 6125, S 107] |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 14, 2019 |
| Length | 3,256,676 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 3,256,676 nt |
| %GC | 28.38% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2859 |
| Number of Hypothetical Proteins | 367 |
| Number of tRNA | 93 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 167,519 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 3,219,918 |
| Illumina Mean Coverage Depth | 241.647× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,219,918 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.51% |
| Estimated genome contamination | 0.95% |
| Illumina depth of coverage | 241.647× |
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