Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 2,489,618 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| N50 | 2,385,776 nt |
| %GC | 39.36% |
| Organism Summary | |
|---|---|
| Name | ATCC® 15678™ |
| Strain Name | [NCTC 11139] |
| Isolation | Liver homogenate of a so-called normal C57B1/6 mouse |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 2319 |
| Number of Hypothetical Proteins | 429 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 241,343 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 10,494,363 |
| Illumina Mean Coverage Depth | 568.005× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads10,494,363
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.32%
PassedAverage depth of coverage568.005×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline