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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 15678™ |
| Strain Alias | [NCTC 11139] |
| Isolation | Liver homogenate of a so-called normal C57B1/6 mouse |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 2,489,618 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| N50 | 2,385,776 nt |
| %GC | 39.36% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2319 |
| Number of Hypothetical Proteins | 429 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 241,343 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 10,494,363 |
| Illumina Mean Coverage Depth | 568.005× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,494,363 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 1.32% |
| Average depth of coverage | 568.005× |
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