ATCC® BAA-1498™ | Bartonella rochalimae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1498™
Strain Alias	BMGH
Isolation	Woman with splenomegaly, fever, anemia - recent travel to Peru; isolated September 5, 2003
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	October 30, 2024
Length	1,542,102 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	1,542,102 nt
%GC	35.79%

Annotations Summary
Number of CDS	1284
Number of Hypothetical Proteins	125
Number of tRNA	41
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	57,740
Oxford Nanopore Median Q Score	36
Illumina Read Count	3,977,196
Illumina Mean Coverage Depth	378.966×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	3,977,196
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.85%
Estimated genome contamination	0%
Illumina depth of coverage	378.966×
ONT depth of coverage	428.049×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions