| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-1498™ | 
| Strain Alias | BMGH | 
| Isolation | Woman with splenomegaly, fever, anemia - recent travel to Peru; isolated September 5, 2003 | 
| Tags | Methylation DataType Strain | 
| Biosafety Level | 2 | 
| Type Strain | Yes | 
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2024 | 
| Length | 1,542,102 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 1 (All Circularized) | 
| N50 | 1,542,102 nt | 
| %GC | 35.79% | 
| Annotations Summary | |
|---|---|
| Number of CDS | 1284 | 
| Number of Hypothetical Proteins | 125 | 
| Number of tRNA | 41 | 
| Number of 5s rRNA | 2 | 
| Number of 16s rRNA | 2 | 
| Number of 23s rRNA | 2 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 57,740 | 
| Oxford Nanopore Median Q Score | 36 | 
| Illumina Read Count | 3,977,196 | 
| Illumina Mean Coverage Depth | 378.966× | 
| Illumina Median Q Score | 40 | 
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,977,196 | 
| Median Q score, all bases | 40 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.85% | 
| Estimated genome contamination | 0% | 
| Illumina depth of coverage | 378.966× | 
| ONT depth of coverage | 428.049× | 
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions