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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 6946™ |
| Strain Alias | NCTC 4215 [BUCSAV 385, CDA 835, FHP 534, NCIB 8929] |
| Isolation | Rice soil |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 5,663,492 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (0 Circularized) |
| N50 | 1,877,354 nt |
| %GC | 72.85% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5585 |
| Number of Hypothetical Proteins | 1027 |
| Number of tRNA | 48 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 159,137 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 15,868,107 |
| Illumina Mean Coverage Depth | 352.894× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 15,868,107 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.22% |
| Estimated genome contamination | 1.3% |
| Average depth of coverage | 352.894× |
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