ATCC® MYA-4565™ | Cryptococcus neoformans

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	18,137,594 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	32
Assembly Level	Scaffold
N50	1,126,385 nt
%GC	48.13%

Organism Summary
Name	ATCC® MYA-4565™
Genotype	VNII, AFLP1A
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	688

Input Reads Summary
Oxford Nanopore Read Count	12,438
Oxford Nanopore Median Q Score	32
Illumina Read Count	60,375,324
Illumina Mean Coverage Depth	479.514×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads60,375,324

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.04%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness90.8%

PassedAverage depth of coverage479.514×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Cryptococcus neoformans (ATCC® MYA-4565™)