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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 18942™ |
| Strain Alias | NRRL YB-423 [CBS 6124, DBVPG 6053, IFO 1548, JCM 2320] |
| Isolation | Corn processing plant |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | October 21, 2021 |
| Length | 20,898,266 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 34 (0 Circularized) |
| N50 | 2,014,421 nt |
| %GC | 49.01% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 743 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,617,980 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 40,702,550 |
| Illumina Mean Coverage Depth | 258.916× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 40,702,550 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 97.23% |
| Average depth of coverage | 258.916× |
Notes
This genome page represents the haploid assembly of Yarrowia lipolytica (ATCC 18942). An additional supplemental dataset is available for download that provides the phased diploid genome assembly and annotations, and variant information for the main haploid assembly of Yarrowia lipolytica strain YB-423 (ATCC 18942), supporting reproducibility and secondary analyses for the publication “Complete Diploid Genome of the Type Strain Yarrowia lipolytica YB-423 (ATCC 18942™)” by Crill et. al., published January 8, 2026 in the Journal of Industrial Microbiology and Biotechnology. DOI: https://doi.org/10.1093/jimb/kuag002
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