ATCC® BAA-330™ | Tsukamurella conjunctivitidis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	4,770,804 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	3,588,274 nt
%GC	70.84%

Organism Summary
Name	ATCC® BAA-330™
Isolation	Sputum; Dept. of Health and Environmental Control
Tags	Type Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	4635
Number of Hypothetical Proteins	715
Number of tRNA	48
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	367,875
Oxford Nanopore Median Q Score	26
Illumina Read Count	11,183,536
Illumina Mean Coverage Depth	340.404×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads11,183,536

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.21%

PassedEstimated genome contamination0.16%

PassedAverage depth of coverage340.404×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Tsukamurella conjunctivitidis (ATCC® BAA-330™)