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- Orthoflavivirus zikaense
- Zika virus
Zika virus (ATCC® VR-1838™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 10,952 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 10,952 nt |
| %GC | 50.34% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1838™ |
| Isolation | Blood of a rhesus monkey that became infected while stationed as a sentinel in forest near Entebbe, Uganda. |
| Tags | |
| Biosafety Level | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 1,330,074 |
| Illumina Mean Coverage Depth | 1,388.94× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)1.02%
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