ATCC® MYA-4620™ | Fusarium graminearum

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	36,946,435 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	22
Assembly Level	Scaffold
N50	7,158,255 nt
%GC	48.02%

Organism Summary
Name	ATCC® MYA-4620™
Isolation	Wheat kernels
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	753

Input Reads Summary
Oxford Nanopore Read Count	647,747
Oxford Nanopore Median Q Score	30
Illumina Read Count	75,179,198
Illumina Mean Coverage Depth	303.132×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads75,179,198

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness99.3%

PassedAverage depth of coverage303.132×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Fusarium graminearum (ATCC® MYA-4620™)