ATCC® 25416™ | Burkholderia cepacia

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	December 20, 2019
Length	8,569,621 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (All Circularized)
N50	3,397,768 nt
%GC	66.6%

Organism Summary
Name	ATCC® 25416™
Strain Name	UCB 717 [717-ICPB 25, Ballard 717, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, HAMBI 1976, ICMP 5796, IFO 14074, JCM 5964, LMG 1222, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810]
Isolation	Plant-derived foodstuff - onion, Allium cepa
Tags	Type Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	7806
Number of Hypothetical Proteins	986
Number of tRNA	72
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	66,084
Oxford Nanopore Median Q Score	15
Illumina Read Count	10,658,851
Illumina Mean Coverage Depth	230.151×
Illumina Median Q Score	38

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,658,851

PassedMedian Q score, all bases38

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination0.2%

PassedAverage depth of coverage230.151×