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  • Maridesulfovibrio salexigens

Maridesulfovibrio salexigens (ATCC® 14822™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedDecember 20, 2019
Length4,289,854 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N504,289,854 nt
%GC47.09%
Organism Summary
NameATCC® 14822™
IsolationSling mud
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,838
Number of Hypothetical Proteins1,903
Number of tRNA89
Number of 5s rRNA5
Number of 16s rRNA5
Number of 23s rRNA5
Input Reads Summary
Oxford Nanopore Read Count165,372
Oxford Nanopore Median Q Score20
Illumina Read Count5,141,483
Illumina Mean Coverage Depth257.218×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,141,483
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.07%
PassedAverage depth of coverage257.218×
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