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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1307™ |
| Strain Alias | 1590 |
| Isolation | Stool of 33-year-old male with AIDS. |
| Biosafety Level | 2 |
| Assembly Summary | |
|---|---|
| Date Published | September 16, 2025 |
| Length | 35,169 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 35,169 nt |
| %GC | 56.99% |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 63,322 |
| Oxford Nanopore Median Q Score | 41 |
| Illumina Read Count | 14,397,314 |
| Illumina Mean Coverage Depth | 39,180.754× |
| Illumina Median Q Score | 40 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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