NEW: View our new taxonomic tree view of all microbial products!
Purchased a product from ATCC? Enter in the lot number to download the omics data or learn more about our supporting memberships here.
Purchased a product from ATCC? Enter in the lot number to download the omics data or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-613™ |
| Strain Alias | WAL 16351 [CCUG 46953] |
| Isolation | Feces; isolated June 2000 |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | October 28, 2020 |
| Length | 6,613,966 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (1 Circularized) |
| N50 | 6,442,458 nt |
| %GC | 49.05% |
Annotations Summary | |
|---|---|
| Number of CDS | 6026 |
| Number of Hypothetical Proteins | 780 |
| Number of tRNA | 75 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 518,666 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 17,942,284 |
| Illumina Mean Coverage Depth | 364.683× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 17,942,284 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 97.96% |
| Estimated genome contamination | 0.59% |
| Illumina depth of coverage | 364.683× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline