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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 40,517,578 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 84 (0 Circularized) |
| N50 | 1,004,162 nt |
| %GC | 57.04% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-359™ |
| Isolation | Vanilla leaf (Achlys triphylla) root in the Wind River Forest Dynamics Plot |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 420 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 972,169 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 129,261,544 |
| Illumina Mean Coverage Depth | 468.77× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads129,261,544
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.05%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
1 out of 2 passed, 1 requires inspection
CautionEstimated genome completeness55.4%
PassedAverage depth of coverage468.77×
Notes
This protist was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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