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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 7,241,866 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (5 Circularized) |
| Assembly Level | Chromosome |
| N50 | 3,702,589 nt |
| %GC | 68.25% |
| Organism Summary | |
|---|---|
| Name | ATCC® 29145™ |
| Isolation | Digitaria decumbens roots, plant |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 6,503 |
| Number of Hypothetical Proteins | 1,024 |
| Number of tRNA | 91 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 10 |
| Number of 23s rRNA | 10 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 29,748 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 10,837,234 |
| Illumina Mean Coverage Depth | 201.55× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads10,837,234
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination2.85%
PassedAverage depth of coverage201.55×
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