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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 29145™ |
| Isolation | Digitaria decumbens roots, plant |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 7,241,866 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (5 Circularized) |
| N50 | 3,702,589 nt |
| %GC | 68.25% |
| Annotations Summary | |
|---|---|
| Number of CDS | 6501 |
| Number of Hypothetical Proteins | 994 |
| Number of tRNA | 91 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 10 |
| Number of 23s rRNA | 10 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 29,748 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 10,837,234 |
| Illumina Mean Coverage Depth | 201.55× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,837,234 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 2.85% |
| Illumina depth of coverage | 201.55× |
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