Organism Summary | |
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Catalog Number | ATCC® 29212™ |
Strain Alias | [Portland] |
Isolation | Urine |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 3,049,036 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (All Circularized) |
N50 | 2,940,724 nt |
%GC | 37.35% |
Annotations Summary | |
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Number of CDS | 2903 |
Number of Hypothetical Proteins | 293 |
Number of tRNA | 61 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 120,935 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 3,152,923 |
Illumina Mean Coverage Depth | 226.3× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,152,923 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.63% |
Estimated genome contamination | 0.01% |
Average depth of coverage | 226.3× |