Organism Summary | |
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Catalog Number | ATCC® 19432™ |
Strain Alias | NCTC 8307 [JCM 8725, NCDO 596, Sherman 98 D] |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | October 28, 2020 |
Length | 3,142,306 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 10 (6 Circularized) |
N50 | 2,923,774 nt |
%GC | 37.88% |
Annotations Summary | |
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Number of CDS | 2998 |
Number of Hypothetical Proteins | 413 |
Number of tRNA | 71 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 238,657 |
Oxford Nanopore Median Q Score | 27 |
Illumina Read Count | 14,249,246 |
Illumina Mean Coverage Depth | 572.232× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 14,249,246 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.63% |
Estimated genome contamination | 1.12% |
Average depth of coverage | 572.232× |