ATCC® BAA-3231™ | Bacteroides cellulosilyticus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	7,080,425 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (2 Circularized)
N50	2,131,046 nt
%GC	42.69%

Organism Summary
Name	ATCC® BAA-3231™
Isolation	Human feces
Tags	Methylation Data
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	5353
Number of Hypothetical Proteins	814
Number of tRNA	61
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	67,999
Oxford Nanopore Median Q Score	23
Illumina Read Count	8,865,878
Illumina Mean Coverage Depth	185.873×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads8,865,878

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.26%

PassedEstimated genome contamination0.93%

PassedAverage depth of coverage185.873×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Bacteroides cellulosilyticus (ATCC® BAA-3231™)