| Bacteroides caccae | Type Strain | ATCC® 43185™ | August 31, 2022 | 4.6 Mb | | |
| Bacteroides cellulosilyticus | | ATCC® BAA-3231™ | April 29, 2024 | 7.1 Mb | | |
| Bacteroides eggerthii | Type Strain | ATCC® 27754™ | August 31, 2020 | 4.2 Mb | | |
| Bacteroides faecium | Type Strain | ATCC® TSD-227™ | December 15, 2021 | 6.8 Mb | | |
| Bacteroides fragilis | | ATCC® 29771™ | September 13, 2024 | 5.2 Mb | | |
| Bacteroides fragilis | | ATCC® 29762™ | August 1, 2022 | 5.1 Mb | | |
| Bacteroides fragilis | | ATCC® 43937™ | March 1, 2021 | 5.2 Mb | | |
| Bacteroides fragilis | Type Strain | ATCC® 25285™ | February 26, 2020 | 5.2 Mb | | |
| Bacteroides fragilis | | ATCC® 43858™ | September 2, 2021 | 5.2 Mb | | |
| Bacteroides fragilis | | ATCC® BAA-2283™ | September 13, 2024 | 5.7 Mb | | |
| Bacteroides fragilis | | ATCC® 43936™ | September 13, 2024 | 5.3 Mb | | |
| Bacteroides fragilis | | ATCC® 43859™ | October 28, 2020 | 5.2 Mb | | |
| Bacteroides fragilis | | ATCC® 43860™ | August 31, 2022 | 5.0 Mb | | |
| Bacteroides fragilis | | ATCC® 51477™ | December 13, 2024 | 5.3 Mb | | |
| Bacteroides fragilis | | ATCC® 23745™ | March 5, 2024 | 5.3 Mb | | |
| Bacteroides fragilis | | ATCC® 700786™ | September 29, 2020 | 5.3 Mb | | |
| Bacteroides ovatus | Type Strain | ATCC® 8483™ | November 30, 2021 | 6.5 Mb | | |
| Bacteroides ovatus | | ATCC® BAA-1296™ | July 1, 2021 | 6.9 Mb | | |
| Bacteroides ovatus | | ATCC® BAA-1304™ | April 28, 2023 | 6.8 Mb | | |
| Bacteroides salyersiae | Type Strain | ATCC® BAA-997™ | April 29, 2024 | 5.3 Mb | | |
| Bacteroides stercoris | Type Strain | ATCC® 43183™ | June 30, 2022 | 4.0 Mb | | |
| Bacteroides thetaiotaomicron | Type Strain | ATCC® 29148™ | March 27, 2020 | 6.3 Mb | | |
| Bacteroides thetaiotaomicron | | ATCC® 29741™ | September 2, 2021 | 6.2 Mb | | |
| Bacteroides thetaiotaomicron | | ATCC® 700349™ | October 29, 2021 | 6.3 Mb | | |
| Bacteroides uniformis | Type Strain | ATCC® 8492™ | April 10, 2024 | 4.5 Mb | | |