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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 29148™ |
| Strain Alias | VPI 5482 [CIP 104206T, E50, NCTC 10582] |
| Isolation | Feces |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 6,302,896 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 17 (1 Circularized) |
| N50 | 4,545,098 nt |
| %GC | 42.87% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4794 |
| Number of Hypothetical Proteins | 572 |
| Number of tRNA | 70 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 83,280 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 12,723,604 |
| Illumina Mean Coverage Depth | 282.566× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 12,723,604 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.41% |
| Estimated genome contamination | 0.4% |
| Average depth of coverage | 282.566× |
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