ATCC® BAA-997™ | Bacteroides salyersiae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	5,319,470 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (1 Circularized)
N50	5,295,103 nt
%GC	41.91%

Organism Summary
Name	ATCC® BAA-997™
Isolation	Clinical specimen - human
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	4048
Number of Hypothetical Proteins	571
Number of tRNA	71
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	46,384
Oxford Nanopore Median Q Score	33
Illumina Read Count	12,135,378
Illumina Mean Coverage Depth	334.451×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads12,135,378

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.26%

PassedEstimated genome contamination0%

PassedAverage depth of coverage334.451×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Bacteroides salyersiae (ATCC® BAA-997™)