ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Legionella pneumophila
  • Legionella pneumophila subsp. pneumophila

Legionella pneumophila subsp. pneumophila (ATCC® 35096™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedDecember 23, 2021
Length3,514,585 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,514,585 nt
%GC38.46%
Organism Summary
NameATCC® 35096™
IsolationLung
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS3,152
Number of Hypothetical Proteins1,567
Number of tRNA43
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count137,204
Oxford Nanopore Median Q Score24
Illumina Read Count24,622,719
Illumina Mean Coverage Depth969.155×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads24,622,719
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.19%
PassedAverage depth of coverage969.155×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline