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  • Abiotrophia defectiva

Abiotrophia defectiva (ATCC® 49176™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedDecember 12, 2022
Length2,041,863 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (0 Circularized)
Assembly SummaryChromosome
N501,933,927 nt
%GC46.99%
Organism Summary
NameATCC® 49176™
IsolationBlood of bacterial endocarditis patient
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS1,836
Number of Hypothetical Proteins728
Number of tRNA47
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count76,110
Oxford Nanopore Median Q Score21
Illumina Read Count14,642,702
Illumina Mean Coverage Depth981.626×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads14,642,702
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.46%
PassedEstimated genome contamination0%
PassedAverage depth of coverage981.626×
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