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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 23877™ |
| Strain Alias | ISP 5053 [3486, CBS 616.68, IFO 12836, RIA 1115] |
| Isolation | Soil |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 23, 2021 |
| Length | 8,209,714 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 14 (1 Circularized) |
| N50 | 961,041 nt |
| %GC | 72.21% |
| Annotations Summary | |
|---|---|
| Number of CDS | 7249 |
| Number of Hypothetical Proteins | 1065 |
| Number of tRNA | 72 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 475,780 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 11,442,537 |
| Illumina Mean Coverage Depth | 185.755× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,442,537 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.5% |
| Average depth of coverage | 185.755× |
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