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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-535™ |
| Strain Alias | M [Moffett Hospital #975973] |
| Isolation | Tissue samples of lesions from Clinical Lab of Moffett Hospital at University of California |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | December 21, 2020 |
| Length | 6,675,451 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| N50 | 5,765,632 nt |
| %GC | 65.76% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5538 |
| Number of Hypothetical Proteins | 637 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 16,373 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 10,986,224 |
| Illumina Mean Coverage Depth | 221.768× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,986,224 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.88% |
| Estimated genome contamination | 0.73% |
| Illumina depth of coverage | 221.768× |
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