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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 27, 2019 |
| Length | 4,984,823 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 4,974,612 nt |
| %GC | 48.25% |
| Organism Summary | |
|---|---|
| Name | ATCC® 51873™ |
| Strain Name | HER 1272 [1672] |
| Isolation | Feces |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4519 |
| Number of Hypothetical Proteins | 370 |
| Number of tRNA | 96 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 66,032 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,695,980 |
| Illumina Mean Coverage Depth | 196.395× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,695,980
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.86%
PassedEstimated genome contamination0.36%
PassedAverage depth of coverage196.395×
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