ATCC® BAA-324™ | Mycobacterium elephantis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 3, 2023
Length	5,361,122 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
Assembly Level	Complete
N50	5,361,122 nt
%GC	67.68%

Organism Summary
Name	ATCC® BAA-324™
Isolation	Sputum; Dept. of Health and Environmental Control
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	5,107
Number of Hypothetical Proteins	597
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	125,488
Oxford Nanopore Median Q Score	12.8
Illumina Read Count	10,489,978
Illumina Mean Coverage Depth	288.822×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,489,978

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.02%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination1.29%

PassedAverage depth of coverage288.822×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Mycobacterium elephantis (ATCC® BAA-324™)