ATCC® BAA-324™ | Mycobacterium elephantis

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® BAA-324™
Strain Alias	NRCM 01-17
Isolation	Sputum; Dept. of Health and Environmental Control
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	October 3, 2023
Length	5,361,122 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	5,361,122 nt
%GC	67.68%

Annotations Summary
Number of CDS	5109
Number of Hypothetical Proteins	577
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	125,488
Oxford Nanopore Median Q Score	12.8
Illumina Read Count	10,489,978
Illumina Mean Coverage Depth	288.822×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,489,978
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	1.29%
Illumina depth of coverage	288.822×
ONT depth of coverage	235.395×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions