| Mycobacterium agri | Type Strain | ATCC® 27406™ | September 5, 2023 | 7.3 Mb | | |
| Mycobacterium agri | | ATCC® 27407™ | October 31, 2023 | 7.3 Mb | | |
| Mycobacterium aichiense | Type Strain | ATCC® 27280™ | February 25, 2023 | 5.9 Mb | | |
| Mycobacterium alvei | | ATCC® 51305™ | October 31, 2023 | 6.3 Mb | | |
| Mycobacterium alvei | Type Strain | ATCC® 51304™ | June 10, 2025 | 6.0 Mb | | |
| Mycobacterium aromaticivorans | Type Strain | ATCC® BAA-1378™ | November 30, 2023 | 6.0 Mb | | |
| Mycobacterium aurum | Type Strain | ATCC® 23366™ | September 5, 2023 | 6.0 Mb | | |
| Mycobacterium austroafricanum | Type Strain | ATCC® 33464™ | February 1, 2024 | 6.7 Mb | | |
| Mycobacterium austroafricanum | | ATCC® 33465™ | November 30, 2023 | 6.3 Mb | | |
| Mycobacterium austroafricanum | | ATCC® 29678™ | October 31, 2022 | 6.9 Mb | | |
| Mycobacterium boenickei | Type Strain | ATCC® 49935™ | June 30, 2023 | 6.6 Mb | | |
| Mycobacterium brisbanense | Type Strain | ATCC® 49938™ | September 5, 2023 | 7.4 Mb | | |
| Mycobacterium brumae | Type Strain | ATCC® 51384™ | April 10, 2024 | 4.0 Mb | | |
| Mycobacterium confluentis | Type Strain | ATCC® 49920™ | June 3, 2024 | 5.9 Mb | | |
| Mycobacterium cosmeticum | | ATCC® BAA-879™ | September 5, 2023 | 6.8 Mb | | |
| Mycobacterium cosmeticum | Type Strain | ATCC® BAA-878™ | June 30, 2023 | 6.5 Mb | | |
| Mycobacterium crocinum | Type Strain | ATCC® BAA-1371™ | September 4, 2024 | 6.3 Mb | | |
| Mycobacterium diernhoferi | Type Strain | ATCC® 19340™ | March 5, 2024 | 6.0 Mb | | |
| Mycobacterium doricum | Type Strain | ATCC® BAA-565™ | September 5, 2023 | 4.0 Mb | | |
| Mycobacterium duvalii | Type Strain | ATCC® 43910™ | September 5, 2023 | 5.6 Mb | | |
| Mycobacterium elephantis | | ATCC® BAA-324™ | October 3, 2023 | 5.4 Mb | | |
| Mycobacterium fallax | Type Strain | ATCC® 35219™ | August 8, 2023 | 4.3 Mb | | |
| Mycobacterium flavescens | Type Strain | ATCC® 14474™ | October 3, 2023 | 6.0 Mb | | |
| Mycobacterium fortuitum subsp. fortuitum | Type Strain | ATCC® 6841™ | October 28, 2020 | 6.3 Mb | | |
| Mycobacterium fortuitum subsp. fortuitum | | ATCC® 35855™ | April 29, 2024 | 6.3 Mb | | |
| Mycobacterium fortuitum subsp. fortuitum | | ATCC® 35754™ | October 3, 2023 | 6.8 Mb | | |
| Mycobacterium gilvum | Type Strain | ATCC® 43909™ | March 1, 2021 | 6.4 Mb | | |
| Mycobacterium goodii | | ATCC® BAA-955™ | October 3, 2023 | 7.0 Mb | | |
| Mycobacterium hassiacum | | ATCC® 700660™ | March 1, 2021 | 5.2 Mb | | |
| Mycobacterium houstonense | Type Strain | ATCC® 49403™ | March 1, 2021 | 6.3 Mb | | |