ATCC® 49920™ | Mycobacterium confluentis

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 49920™
Strain Alias	DSM 44017
Isolation	Sputum from healthy male
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	June 3, 2024
Length	5,871,233 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	5,871,233 nt
%GC	67.49%

Annotations Summary
Number of CDS	5506
Number of Hypothetical Proteins	586
Number of tRNA	47
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	161,967
Oxford Nanopore Median Q Score	26
Illumina Read Count	11,962,190
Illumina Mean Coverage Depth	299.796×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	11,962,190
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.69%
Estimated genome contamination	1.29%
Illumina depth of coverage	299.796×
ONT depth of coverage	202.34×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions