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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-878™ |
| Strain Alias | LTA-388 [CIP 108170] |
| Isolation | Clinical specimen; isolated April 2003 |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 30, 2023 |
| Length | 6,456,239 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (1 Circularized) |
| N50 | 4,501,298 nt |
| %GC | 68.26% |
| Annotations Summary | |
|---|---|
| Number of CDS | 6283 |
| Number of Hypothetical Proteins | 729 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 126,402 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 11,316,313 |
| Illumina Mean Coverage Depth | 229.99× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,316,313 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.51% |
| Estimated genome contamination | 1.12% |
| Average depth of coverage | 229.99× |
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