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  • Haemophilus
  • Haemophilus influenzae

Haemophilus influenzae (ATCC® 9008™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length1,895,884 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N501,877,709 nt
%GC38.18%
Organism Summary
NameATCC® 9008™
Genotype
IsolationThroat of young adult with respiratory infection
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS1,806
Number of Hypothetical Proteins474
Number of tRNA57
Number of 5s rRNA7
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count50,726
Oxford Nanopore Median Q Score25
Illumina Read Count5,374,866
Illumina Mean Coverage Depth574.455×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,374,866
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0.22%
PassedAverage depth of coverage574.455×
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