ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Desulfovibrio
  • Desulfovibrio desulfuricans

Desulfovibrio desulfuricans (ATCC® 29577™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length3,434,615 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs4 (0 Circularized)
Assembly LevelChromosome
N503,212,941 nt
%GC57.37%
Organism Summary
NameATCC® 29577™
IsolationTar-sand mixture in waterlogged clay
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS2,896
Number of Hypothetical Proteins1,338
Number of tRNA57
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count614,833
Oxford Nanopore Median Q Score23
Illumina Read Count5,532,082
Illumina Mean Coverage Depth296.406×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,532,082
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage296.406×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline