Organism Summary | |
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Catalog Number | ATCC® 12633™ |
Strain Alias | [A.3.12, ATCC 23467, NCIB 9494, NCTC 10936, R.Y. Stanier 90] |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Antigenic Properties | Biotype A |
Assembly Summary | |
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Date Published | December 23, 2021 |
Length | 6,178,724 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (0 Circularized) |
N50 | 6,064,143 nt |
%GC | 62.33% |
Annotations Summary | |
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Number of CDS | 5458 |
Number of Hypothetical Proteins | 405 |
Number of tRNA | 74 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 228,454 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 12,784,875 |
Illumina Mean Coverage Depth | 274.261× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 12,784,875 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.88% |
Estimated genome contamination | 1.12% |
Average depth of coverage | 274.261× |