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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Name | ATCC® 19258™ |
| Strain Name | NCDO 573 [NCIMB 8510, B of R, CNCTC 28/89, DSM 20617, CCUG 21957, CIP 102303, LMG 6896] |
| Isolation | Pasteurized milk |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 2,102,268 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,102,268 nt |
| %GC | 39.02% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2137 |
| Number of Hypothetical Proteins | 277 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 130,837 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,783,228 |
| Illumina Mean Coverage Depth | 509.684× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads4,783,228
Median Q score, all bases38
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.89%
Estimated genome contamination0.4%
Average depth of coverage509.684×
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