Organism Summary | |
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Catalog Number | ATCC® 700345™ |
Strain Alias | ANG-SQ1 |
Isolation | Accessory nidamental gland of live, mature, female common squid, Loligo pealei |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 5,179,767 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 5,179,767 nt |
%GC | 44.66% |
Annotations Summary | |
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Number of CDS | 4273 |
Number of Hypothetical Proteins | 458 |
Number of tRNA | 146 |
Number of 5s rRNA | 13 |
Number of 16s rRNA | 12 |
Number of 23s rRNA | 12 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 391,035 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 3,030,183 |
Illumina Mean Coverage Depth | 105.189× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,030,183 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.68% |
Estimated genome contamination | 0.04% |
Average depth of coverage | 105.189× |