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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-646™ |
| Strain Alias | CBS 7987 [ATCC MYA-178, CD 36, NCPF 3949, NRRL Y-17841] |
| Isolation | Oral cavity of HIV-infected patient |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 14,842,438 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 20 (0 Circularized) |
| N50 | 2,200,980 nt |
| %GC | 33.29% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 733 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 464,118 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 23,977,473 |
| Illumina Mean Coverage Depth | 226.602× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 23,977,473 |
| Median Q score, all bases | 37 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 88.79% |
| Average depth of coverage | 226.602× |
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