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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 14,842,438 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 20 |
| Assembly Level | Scaffold |
| N50 | 2,200,980 nt |
| %GC | 33.29% |
| Organism Summary | |
|---|---|
| Name | ATCC® MYA-646™ |
| Isolation | Oral cavity of HIV-infected patient |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 733 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 464,118 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 23,977,473 |
| Illumina Mean Coverage Depth | 226.602× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads23,977,473
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness88.79%
PassedAverage depth of coverage226.602×
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