Organism Summary | |
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Catalog Number | ATCC® BAA-42™ |
Genotype | pvl negative |
Isolation | Hospital pneumology ward |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | July 30, 2021 |
Length | 2,869,556 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 2,834,575 nt |
%GC | 32.84% |
Annotations Summary | |
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Number of CDS | 2819 |
Number of Hypothetical Proteins | 356 |
Number of tRNA | 59 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 224,065 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 9,224,647 |
Illumina Mean Coverage Depth | 346.4× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,224,647 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.51% |
Estimated genome contamination | 0.08% |
Average depth of coverage | 346.4× |