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  • Shewanella
  • Shewanella fidelis

Shewanella fidelis (ATCC® BAA-318™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedMay 30, 2022
Length4,899,548 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N504,899,548 nt
%GC42.91%
Organism Summary
NameATCC® BAA-318™
IsolationSediment; isolated by E. Ivanova
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,150
Number of Hypothetical Proteins1,839
Number of tRNA148
Number of 5s rRNA12
Number of 16s rRNA11
Number of 23s rRNA11
Input Reads Summary
Oxford Nanopore Read Count181,991
Oxford Nanopore Median Q Score25
Illumina Read Count14,019,040
Illumina Mean Coverage Depth390.181×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads14,019,040
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.84%
PassedEstimated genome contamination0%
PassedAverage depth of coverage390.181×
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