ATCC® 21548™ | Streptococcus pyogenes

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 5, 2024
Length	1,771,740 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	1,771,740 nt
%GC	38.52%

Organism Summary
Name	ATCC® 21548™
Strain Name	Blackmore
Tags
Biosafety Level	2
Type Strain
Antigenic Properties	Lancefield's group A

Annotations Summary
Number of CDS	1682
Number of Hypothetical Proteins	118
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	75,063
Oxford Nanopore Median Q Score	26
Illumina Read Count	9,464,636
Illumina Mean Coverage Depth	791.214×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,464,636

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.85%

PassedEstimated genome contamination0%

PassedAverage depth of coverage791.214×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus pyogenes (ATCC® 21548™)