ATCC® 21548™ | Streptococcus pyogenes

Overview

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Quality Control

Assembly Summary
Date Published	March 5, 2024
Length	1,771,740 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	1,771,740 nt
%GC	38.52%

Annotations Summary
Number of CDS	1682
Number of Hypothetical Proteins	118
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	75,063
Oxford Nanopore Median Q Score	26
Illumina Read Count	9,464,636
Illumina Mean Coverage Depth	791.214×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,464,636
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.85%
Estimated genome contamination	0%
Illumina depth of coverage	791.214×
ONT depth of coverage	369.25×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions