ATCC® BAA-1125™ | Rhodopseudomonas palustris

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 26, 2020
Length	5,505,445 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
Assembly Level	None
N50	5,505,445 nt
%GC	64.44%

Organism Summary
Name	ATCC® BAA-1125™
Isolation	Sediment; freshwater marsh in direct contact with industrially polluted River Merwede; isolated August 16, 1999
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of CDS	4,967
Number of Hypothetical Proteins	772
Number of tRNA	49
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	532,796
Oxford Nanopore Median Q Score	21
Illumina Read Count	7,834,409
Illumina Mean Coverage Depth	264.393×
Illumina Median Q Score	38

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,834,409

PassedMedian Q score, all bases38

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.66%

PassedEstimated genome contamination0.35%

PassedAverage depth of coverage264.393×