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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 27426™ |
| Strain Name | ISP 5534 [CBS 113.60; 390, CBS 738.72, IFO 13437, RIA 1398] |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 2, 2023 |
| Length | 8,103,183 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (1 Circularized) |
| N50 | 1,224,978 nt |
| %GC | 71.1% |
| Annotations Summary | |
|---|---|
| Number of CDS | 7071 |
| Number of Hypothetical Proteins | 1086 |
| Number of tRNA | 72 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 134,275 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 6,509,685 |
| Illumina Mean Coverage Depth | 104.996× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads6,509,685
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.49%
Estimated genome contamination0.7%
Average depth of coverage104.996×
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