ATCC® BAA-2674™ | Streptococcus agalactiae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 5, 2024
Length	2,260,660 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
Assembly Level	Complete
N50	2,260,660 nt
%GC	35.64%

Organism Summary
Name	ATCC® BAA-2674™
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	2,197
Number of Hypothetical Proteins	181
Number of tRNA	79
Number of 5s rRNA	7
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	642,961
Oxford Nanopore Median Q Score	27
Illumina Read Count	10,251,956
Illumina Mean Coverage Depth	663.492×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,251,956

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.29%

PassedEstimated genome contamination0.18%

PassedAverage depth of coverage663.492×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus agalactiae (ATCC® BAA-2674™)